CLCbio Genomics Tool name | CLCbio Genomics |
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URL | http://www.clcbio.com/index.php?id=1243 |
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Important features | 1. Analyse genomic, transcriptomic, and epigenomic data. It is a command-line program.
2. Supports de novo assembly of paired-end data and hybrid assembly of multiple data types.
3. Handles short and long read assembly, as well as gapped and ungapped alignment. |
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Citations | |
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Year of publication | Not available |
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Rank by usage frequency | 100 |
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Comments | |
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Function | RNA seq alignment, De novo assembler, Reference assembler, Visualization, SNP discovery, Indel discovery, Software package |
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Category | Paid, Downloadable |
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License | |
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Status | |
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Input file format | FASTA, FASTQ, GenBank, SAM, BAM, Illumina Bustard, ELAND, CSFasta/CSQUAL (ABI SOLiD) |
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Output file format | FASTA, FASTQ, GFF, GenBank, SAM, BAM, ACE, Nexus |
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Operating system | Windows, Mac OS X, Linux |
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Operating language | Java, C++ |
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Platform | Sanger, Roche 454, Illumina/Solexa, ABI SOLiD, Helicos |
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Maintained by | Computational Biology Group, University of Cambridge
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Downloadable file format | |
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Submission file format | |
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